Similar HOG based on pairwise relations to

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

HOG:E0803508.2b with 2 members (DnaJ heat shock protein family Hsp40 member C11)

Eukaryota / Opisthokonta / Fungi / Dikarya / Basidiomycota / Ustilaginomycotina / Ustilaginaceae / Ustilago

Completeness score: 1.00

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This HOG has 55 similar HOGs:

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Rank	HOG ID	Shared orthologs	HOG size	Description
1	HOG:E0803508.2b	400	431	DnaJ heat shock protein family Hsp40 member C11
2	HOG:E0803508.2b.2b.3b.8a	202	108	DnaJ heat shock protein family Hsp40 member C11
3	HOG:E0803508	153	570	DnaJ heat shock protein family Hsp40 member C11
4	HOG:E0476313	77	63	domain-containing protein
5	HOG:E0803508.2b.2b.3b	74	164	DnaJ heat shock protein family Hsp40 member C11
6	HOG:E0803508.2b.2a	74	43	DnaJ heat shock protein family Hsp40 member C11
7	HOG:E0803508.1b	21	12	DnaJ heat shock protein family Hsp40 member C11
8	HOG:E0803508.8a	6	3	DnaJ heat shock protein family Hsp40 member C11
9	HOG:E0803508.2b.2b.3b.7a	6	3	DnaJ heat shock protein family Hsp40 member C11
10	HOG:E0803508.2b.2b.3b.6b	6	3	DnaJ heat shock protein family Hsp40 member C11
11	HOG:E0803508.8b.3b	4	2	DnaJ heat shock protein family Hsp40 member C11
12	HOG:E0803508.8b	4	5	DnaJ heat shock protein family Hsp40 member C11
13	HOG:E0803508.2b.2b.3b.8b	4	2	DnaJ heat shock protein family Hsp40 member C11
14	HOG:E0803508.2b.2b.3b.6a	4	2	DnaJ heat shock protein family Hsp40 member C11
15	HOG:E0803508.2b.2b	4	173	DnaJ heat shock protein family Hsp40 member C11
16	HOG:E0803508.12b	4	2	DnaJ heat shock protein family Hsp40 member C11
17	HOG:E0803508.12a	4	2	DnaJ heat shock protein family Hsp40 member C11
18	HOG:E0803508.9b	2	1	DnaJ heat shock protein family Hsp40 member C11
19	HOG:E0803508.9a	2	1	DnaJ heat shock protein family Hsp40 member C11
20	HOG:E0803508.8b.3a	2	1	DnaJ heat shock protein family Hsp40 member C11
21	HOG:E0803508.7b	2	1	DnaJ heat shock protein family Hsp40 member C11
22	HOG:E0803508.7a	2	1	DnaJ heat shock protein family Hsp40 member C11
23	HOG:E0803508.6a	2	1	DnaJ heat shock protein family Hsp40 member C11
24	HOG:E0803508.5a	2	1	DnaJ heat shock protein family Hsp40 member C11
25	HOG:E0803508.4c	2	1	DnaJ heat shock protein family Hsp40 member C11

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